Adams MJ, Candresse T, Hammond J, Kreuze JF, Martelli GP, et al., 2012. Family Betaflexiviridae. In: Virus Taxonomy. 9th Report of the ICTV; King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ, (Eds) Elsevier Academic Press: Amsterdam. pp. 920–941.
Çağlayan K, Roumi V, Gazel M, Elçi E, Acıoğlu M,
et al., 2019. Identification and characterization of a novel
Robigovirus species from sweet cherry in Turkey.
Pathogens 8(2): 57.
https://doi.org/10.3390/pathogens8020057
Çağlayan K, Gazel M, Roumi V, Kocabag HD, Tunç B, et al., 2020. Identification of pomegranate as a new host of passiflora edulis symptomless virus (PeSV) and analysis of PeSV diversity. Agronomy 10: 1821. https://doi.org/10.3390/agronomy10111821
Caiola MG, Faoro F, 2011. Latent virus infections in
Crocus sativus and
Crocus cartwrightianus.
Phytopathologia Mediterranea 50(2): 17: 5–182.
http://www.jstor.org/stable/26458691.
EPPO, 2022. Tomato spotted wilt virus. EPPO datasheets on pests recommended for regulation. Available online.
https://gd.eppo.int [Accessed 23th September 2023].
Escribano J, Alonso GL, Coca-Prados M, Fernandez JA, 1996. Crocin, safranal and picrocrocin from saffron (Crocus sativus L.) inhibit the growth of human cancer cells in vitro. Cancer Letters 100(1–2): 23–30. doi: 10.1016/0304-3835(95)04067-6. PMID: 8620447.
Farokhoond F, Hosseini SA, Salary Kh, Aminifard MH, 2017. Detection and phylogenetic analysis of saffron and tomato isolates of Tomato spotted wilt virus from South Khorasan. Iranian Journal of Plant Protection Science 8(2): 217–227 (In Persian with English abstract).
Gazel M, Roumi V, Ördek K, Maclotc F, Massart S, et al., 2020. Identification and molecular characterization of a novel Foveavirus from Rubus spp. in Turkey. Virus Research 286: 198078.
Glasa M, Šoltys K, Predajňa L, Sihelská N, Budiš J, et al., 2019. High-throughput sequencing of Potato virus M from tomato in Slovakia reveals a divergent variant of the virus. Plant Protection Science 55: 159–166.
Gresta F, Lombardo GM. Siracusa L. Ruberto G, 2008. Saffron, an alternative crop for sustainable agricultural systems. A review. Agronomy for Sustainable Development 28: 95–112. doi: 10.1051/agro:2007030
Hanafi M, Rong W, Tamisier L, Berhal C, Roux N, et al., 2022. Detection of Banana mild mosaic virus in Musa in vitro plants: high-throughput sequencing presents higher diagnostic sensitivity than (IC)-RT-PCR and identifies a new Betaflexiviridae species. Plants 11(2): 226. https://doi.org/10.3390/plants11020226.
Heidari M, Hosseini SA, Douri R, 2018. Detection and phylogenetic analysis of Turnip mosaic virus on saffron (Crocus sativus) in Iran. Journal of Applied Researches in Plant Protection 7 (1): 17–28.
ICTV Reports, 2020. Virus Taxonomy: 2020 Release. Available from: https://talk.ictvonline.org/ictv-reports/ictv_online_report/positive-sense-rna-viruses/w/alphaflexiviridae/1330/genus-potexvirus [Accessed 8th March 2022].
Inoue-Nagata AK, Jordan R, Kreuze J, Li F, López-Moya JJ, et al., 2022. ICTV Report Consortium. ICTV Virus Taxonomy Profile: Potyviridae. Journal of General Virology 103(5). doi: 10.1099/jgv.0.001738. PMID: 35506996.
Katoh K, Standley DM, 2013. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability.
Molecular Biology & Evolution. 30 (4): 772–780.
https://doi.org/10.1093/molbev/mst010
Koocheki A, 2018. Agro-ecological aspects of saffron production with a holistic approach. Fifth National Conference on Saffron, 14-15 November 2018, Torbat-Heydarieh, Iran (In Persian with English Summary).
Koocheki A, Seyyedi SM, 2019. Saffron “seed”, the corm. In: Koocheki A. & Khajeh-Hosseini M, (eds). Saffron: Science, Technology and Health. Elsevier Inc. Amsterdam. pp. 93–118.
Kumar S, Stecher G, Li M, Knyaz C. Tamura K, 2018. MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Molecular Biology & Evolution 35: 1547–1549.
Maliogka VI, Minafra A, Saldarelli P, Ruiz-García AB, Glasa M,
et al., 2018. Recent advances on detection and characterization of fruit tree viruses using high-throughput sequencing technologies.
Viruses 10(8): 436.
https://doi.org/10.3390/v10080436
Marais A, Faure C, Mustafayev E, Barone M, Alioto D, et al., 2015. Characterization by Deep Sequencing of Prunus virus T, a Novel Tepovirus Infecting Prunus Species. Phytopathology 105: 135–140.
Martin DP, Varsani A, Roumagnac P, Botha G, Maslamoney S,
et al., 2020. RDP5: a computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets.
Virus Evolution 7(1), veaa087.
https://doi.org/10.1093/ve/veaa087
Mahmodi P, Moeini A, Khayam Nekoie S, Mardi M, Hosseini Salekdeh G, 2014. Analysis of saffron stigma (Crocus sativus L.) transcriptome using SOAP de novo and trinity assembly software. Crop Biotechnology 4(6): 35–46.
Miglino R, Jodlowska A, Van Schadewijk AR, 2005. First Report of Narcissus mosaic virus Infecting Crocus spp. Cultivars in the Netherlands. Plant Disease 89: 342.
Negbi M, 1999. Saffron: Crocus sativus L. Medicinal and Aromatic Plants: Industrial Profiles. Harwood Academic Publishers. 152Pp.
Parizad S, Dizadji A, Koohi Habibi M, Winter S, Kalantari S, et al., 2017. Prevalence of saffron latent virus (SaLV), a new potyvirus species, in saffron fields of Iran. Journal of Plant Pathology 99(3): 802.
Parizad S, Dizadji A, Koohi Habibi M, Mosahebi Mohammadi Gh, Kalantari S, et al., 2016. Identification and partial characterization of the virus infecting saffron (Crocus sativus) in Iran. Iranian Journal of Plant Protection Science 47(2): 263–275. (In Persian with English abstract).
Redila CD, Prakash V, Nouri S, 2021. Metagenomics analysis of the wheat virome identifies novel plant and fungal-associated viral sequences. Viruses 13: 2457.
Roumi V, Caglayan K, Gazel M, Shifang Li, 2021. Tomato chlorosis virus found to infect Cestrum elegans and C. nocturnum in Turkey. European Journal of Plant Pathology 161: 247–252. https://doi.org/10.1007/s10658-021-02310-y
Saitou N, Nei M, 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology & Evolution 4: 406–425.
Shahnoushi N, Abolhassani L, Kavakebi V, Reed M, Saghaian S, 2019. Economic analysis of saffron production. In: Koocheki A, & Khajeh-Hosseini M, (eds). Saffron: Science, Technology and Health. Elsevier Inc. Amsterdam. pp. 337–356.
Silva JMF, Melo FL, Elena SF, Candresse T, Sabanadzovic S, et al., 2022. Virus classification based on in-depth sequence analyses and development of demarcation criteria using the Betaflexiviridae as a case study. Journal of General Virology 103(11). doi: 10.1099/jgv.0.001806. PMID: 36399124.
Soleymani S, Zabihollahi R, Shahbazi S, Bolhassani A, 2018. Antiviral effects of saffron and its major ingredients. Current Drug Delivery 15(5): 698–704. doi: 10.2174/1567201814666171129210654. PMID: 29189153.
Soltani N, Stevens KA, Klaassen V, Hwang MS, Golino DA,
et al., 2021. Quality assessment and validation of high-throughput sequencing for grapevine virus diagnostics.
Viruses 13: 1130.
https://doi.org/10.3390/v13061130
Tavakoli Bardaskan A, Hosseini SA, Gharouni Kardani S, 2023. Detection and phylogenetic analysis of saffron latent virus in saffron fields of South Khorasan and Razavi provinces. Journal of Applied Research in Plant Protection 13 (1): 15–25.
Xylogianni E, Margaria P, Knierim D, Sareli K, Winter S,
et al., 2021. Virus surveys in olive orchards in Greece identify Olive Virus T, a novel member of the genus
Tepovirus.
Pathogens 10(5): 574.
https://doi.org/10.3390/pathogens10050574
Zerbino DR, 2010. Using the Velvet de novo assembler for short-read sequencing technologies. Current Protocols in Bioinformatics 31: 11.5.1–11.5.12. doi: 10.1002/0471250953.bi1105s31.
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